Fig. 4

Phylogenetic analysis ofE. coliisolates from Asia. Maximum-likelihood phylogeny inferred from 107,712 recombinant filtered core SNPs of 408 E. coli genomes isolated from Asia that shared the same ST as the isolates from Thailand (labelled with a black triangle) and 25 E. coli genomes from this study. E. coli strain K-12 substrain MG1655 (CP012868) was used as the reference. Midpoint rooted and branch lengths were ignored. The collapsed node represents 47 ST10 genomes from China and India. The host, isolation year, and geographical origin are displayed. Where information was not available it was left blank. Numbers at nodes represent < 90% bootstrap support